Data availability

All raw sequencing data generated in this study are publicly available at NCBI SRA under BioProject PRJNA1299487. Accession identifiers for all 1,593 samples, including all publicly available datasets reanalysed in this study, are provided in Supplementary File 1.

Users can download the main reusable outputs here:

• metadata table;
• microbial profiles;
• metagenome-assembled genomes.